Bioinformatics

Install VEP ensembl failed

because of file aborted.

Photo by Aaron Burden on Unsplash

Recently I used VEP for analyzing some data, and faced quite some of difficulties while installing it. So I guess it might help some of you guys.

ERROR: Testing VEP script failed with the following error
Attempt to reload Bio/EnsEMBL/IO/Parser.pm aborted.
Compilation failed in require at /usr/share/perl/5.26/parent.pm line 16.
BEGIN failed--compilation aborted at /home/ubuntu/ensembl-vep/Bio/EnsEMBL/IO/TextParser.pm line 45.
Compilation failed in require at /usr/share/perl/5.26/parent.pm line 16.
BEGIN failed--compilation aborted at /home/ubuntu/ensembl-vep/Bio/EnsEMBL/IO/ColumnBasedParser.pm line 36.
Compilation failed in require at /usr/share/perl/5.26/parent.pm line 16.
BEGIN failed--compilation aborted at /home/ubuntu/ensembl-vep/Bio/EnsEMBL/IO/Parser/BaseVCF4.pm line 45.
Compilation failed in require at /usr/share/perl/5.26/parent.pm line 16.
BEGIN failed--compilation aborted at /home/ubuntu/ensembl-vep/Bio/EnsEMBL/IO/Parser/VCF4.pm line 41.
Compilation failed in require at /home/ubuntu/ensembl-vep/modules/Bio/EnsEMBL/VEP/Parser/VCF.pm line 79.
BEGIN failed--compilation aborted at /home/ubuntu/ensembl-vep/modules/Bio/EnsEMBL/VEP/Parser/VCF.pm line 79.
Compilation failed in require at /home/ubuntu/ensembl-vep/modules/Bio/EnsEMBL/VEP/Parser.pm line 71.
BEGIN failed--compilation…