Bioinformatics

Parse GTF file in Python

with gtfparse

Photo by Nikolay Kovalenko | Colin Viessmann on Unsplash

As a bioinformatics engineer, we often need to work with gtf files (Gene transfer format).Here we will go over for how to use gtfparse to read data from gtf file.

Example gtf file we can get from here : ftp://ftp.ensembl.org/pub/release-100/gtf/homo_sapiens/Homo_sapiens.GRCh38.100.gtf.gz .