Quality Control

Quality Control Fastq File

It is necessary to understand, identify and exclude error-types that may impact the interpretation of downstream analysis. Sequence quality control is therefore an essential first step in your analysis. Catching errors early saves time later on.

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Photo by Patrick Mueller on Unsplash

Check total number of words

wc -l mutant_R1.fastq
49920 mutant_R1.fastq

Quality Score

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Tool for check quality of fastq file

Reference

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