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Spark Yarn Cluster lost executor when running with Annovar

Donald Le
Apr 9, 2021

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How to fix it.

  1. Annovar only supports with spark via “local[*]” mode. The example command for running is like:
spark-submit --master local[*]  spark.jar ...

2. We need to also use jdk 8 instead of jdk 11 because annovar does not support later java version.

~~PEACE~~

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Donald Le
Donald Le

Written by Donald Le

A passionate automation engineer who strongly believes in “A man can do anything he wants if he puts in the work”.

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